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Psychedelic Medicine 2025: Key Insights and Challenges

Posted in Clinical topics, Neuroscience with tags , , , , , on November 10, 2025 by nvmmanager

An Inflection Point in Psychedelic Medicine

The field of psychedelic-assisted therapy stands at a critical, paradoxical juncture in 2025. The period has been defined by a profound split between regulatory adversity and accelerating clinical and scientific progress. On one hand, the therapeutic pipeline faced a seismic shock in August 2024 with the U.S. Food and Drug Administration (FDA) rejection of the New Drug Application (NDA) for MDMA-assisted therapy for post-traumatic stress disorder (PTSD). This decision, driven by fundamental concerns over trial design, functional unblinding, and data integrity, has exposed a methodological crisis for the entire field, questioning the suitability of the “gold-standard” placebo-controlled trial for powerfully psychoactive substances.

On the other hand, clinical momentum for other compounds has never been stronger. In June 2025, COMPASS Pathways announced the first-ever successful Phase 3 trial results for a classic psychedelic, with its COMP360 (psilocybin) program for treatment-resistant depression (TRD). This was preceded by the FDA granting Breakthrough Therapy Designation to MindMed’s MM120 (LSD) for generalized anxiety disorder (GAD) based on a novel “drug-only” protocol.

Simultaneously, a multi-scale neuroscientific framework has emerged, providing a powerful and unified biological rationale for the rapid and sustained therapeutic effects observed in clinics. The “Psychoplastogen” and “Reopening Critical Periods” hypotheses have moved the field from descriptive psychology to quantitative neurobiology. This report analyzes the 2024-2025 clinical landscape, deconstructs the unified mechanistic models, and provides a forward outlook on a field that has moved past its initial “renaissance” and into a more rigorous, challenging, and mechanistically-driven “second wave.”

Part I: The Clinical and Regulatory Landscape (2024-2025)

The past 18 months have been among the most consequential in the history of psychedelic medicine, characterized by a landmark regulatory failure that has reshaped trial design expectations, juxtaposed with a series of major clinical and regulatory successes for psilocybin and LSD programs.

1.1 MDMA-Assisted Therapy for PTSD: A Pivotal Regulatory Setback

The most significant event of the 2024-2025 period was the FDA’s rejection of the NDA for MDMA-assisted therapy for PTSD, a treatment developed and sponsored by Lykos Therapeutics (formerly MAPS Public Benefit Corporation).

Pivotal Phase 3 Efficacy (MAPP1 & MAPP2): The application was supported by two ostensibly successful Phase 3, randomized, double-blind, placebo-controlled trials (MAPP1 and MAPP2). The data, particularly from the confirmatory MAPP2 trial (n=104) published in Nature Medicine , demonstrated profound efficacy for participants with severe, chronic PTSD (average symptom duration > 16 years).

Key efficacy data from the MAPP2 trial showed that 71.2% of participants in the MDMA-assisted therapy group no longer met the diagnostic criteria for PTSD, compared to 47.6% in the placebo-plus-therapy group. Furthermore, 46.2% of participants in the MDMA arm achieved complete remission, more than double the 21.4% in the placebo group. The trials reported no serious adverse effects related to the drug. This data represented a potential breakthrough for a patient population with immense unmet need.

The August 2024 FDA Rejection: Despite this efficacy, the FDA’s Psychopharmacologic Drugs Advisory Committee (PDAC) voted 10-1 that the treatment’s benefits did not outweigh its risks. The FDA subsequently issued a Complete Response Letter (CRL) on August 9, 2024, rejecting the application.

The CRL, made public in September 2025 , and the PDAC’s preceding deliberations detailed fundamental flaws in the trial, demanding at least one additional large-scale study. The key deficiencies included :

  1. Functional Unblinding and Expectancy Bias: This was the central methodological failure. Due to MDMA’s powerful psychoactive effects, participants and therapists were “functionally unblinded,” meaning they could easily guess whether they had received the active drug or the placebo. This invalidates the integrity of the placebo control, as the positive results could be driven by expectancy bias. The FDA noted this was compounded by selection bias, as approximately 40% of trial participants had prior illicit MDMA use, further compromising the blind.
  2. Inadequate Safety and Abuse Potential Data: The CRL cited a “failure to report positive or abuse potential adverse events”. By not systematically collecting data on favorable subjective effects like euphoria, the sponsor failed to provide the FDA with the necessary information to assess the drug’s true abuse liability. Cardiovascular risks were also a prominent concern.
  3. Data Integrity and Therapist Bias: With the therapists also unblinded, the advisory panel raised concerns about potential “misconduct and bias”. The positive expectations of the therapists, who were responsible for the crucial psychotherapy component , may have biased data collection and therapeutic outcomes.
  4. Lack of Durability Data: The trials failed to establish efficacy beyond 18 weeks, which the FDA deemed insufficient for the chronic nature of PTSD. The follow-up study was considered inadequate due to poor design and low enrollment.

This rejection has triggered an industry-wide “recalibration” , signaling that the standard double-blind, placebo-controlled trial design is likely incompatible with subjectively powerful psychoactive substances. The entire field must now innovate new trial designs to overcome the “unblinding” hurdle, a challenge that has immediate implications for all other psychedelic compounds in development.

1.2 Psilocybin for Depressive Disorders: The Emerging Front-Runner

In stark contrast to the MDMA setback, the psilocybin pipeline for depression achieved critical, positive milestones in 2024-2025.

COMPASS Pathways (COMP360) for TRD: On June 23, 2025, COMPASS Pathways announced that its first pivotal Phase 3 trial (COMP005) for synthetic psilocybin (COMP360) in Treatment-Resistant Depression (TRD) successfully met its primary endpoint. This represents the first Phase 3 efficacy data for any classic psychedelic.

The trial (n=258) demonstrated a highly statistically significant and clinically meaningful reduction in depression severity at Week 6.

  • Primary Endpoint: A single 25 mg dose of COMP360 showed a mean treatment difference of -3.6 points on the Montgomery-Åsberg Depression Rating Scale (MADRS) compared to placebo.
  • Statistical Significance: The result was highly significant, with a p-value of <0.001.
  • Safety: The Independent Data Safety Monitoring Board (DSMB) confirmed no new safety signals and found “no clinically meaningful imbalance in suicidal ideation” between the arms.

Usona Institute (uAspire) for MDD: A parallel Phase 3 program (uAspire, NCT06308653) is being conducted by the nonprofit Usona Institute for Major Depressive Disorder (MDD). This randomized, double-blind, multicenter study is actively recruiting as of late 2025. Both Usona and COMPASS hold FDA Breakthrough Therapy designations for their psilocybin programs.

Novel Analogs: The CYB003 Breakthrough: Signaling a move toward “next-generation” compounds, Cybin Inc. received FDA Breakthrough Therapy Designation in March 2024 for CYB003. This is a deuterated psilocybin analog designed for a potentially improved pharmacokinetic profile. The designation was based on Phase 2 data demonstrating unprecedented durability. After two 16 mg doses, 75% of participants achieved remission at 4 months. Follow-up data confirmed this durability, with 71% of the 16 mg group remaining in remission at 12 months.

The success of COMP360, however, creates a direct conflict with the FDA’s MDMA CRL. The COMP005 trial, like the MAPP trials, used a low-dose (1 mg) placebo, which is just as susceptible to functional unblinding. This sets the stage for a major regulatory confrontation, as the FDA must now decide whether to apply the same harsh methodological standard to a second, statistically powerful dataset.

1.3 Emerging Clinical Targets: GAD and Expanded Depression Treatment

Beyond PTSD and TRD, 2024-2025 saw significant developments in GAD and an expansion of the only approved psychedelic-like drug.

LSD (MM120) for Generalized Anxiety Disorder (GAD): In March 2024, MindMed’s MM120 (lysergide d-tartrate, or LSD) received FDA Breakthrough Therapy Designation for GAD. This was based on a highly successful Phase 2b trial (n=198), the results of which were published in September 2025.

  • Key Data: A single 100 µg dose of MM120 produced rapid and durable anxiety relief.
  • Efficacy: At 12 weeks, 65% of participants showed a clinical response, versus 30.8% for placebo.
  • Remission: A 47.5% clinical remission rate was observed at 12 weeks, versus 20% for placebo.

This trial represents a potential paradigm shift. The MM120 dose was administered without any accompanying psychotherapy. Its success provides the first robust evidence that the pharmacological agent alone may be sufficient for a durable therapeutic effect. This “drug-only” protocol offers a far more scalable and less costly model that also neatly sidesteps the “drug-plus-therapy” confounding issue that was central to the MDMA rejection.

Ketamine and Esketamine (Spravato): Expanded Approval: The field’s only FDA-approved drug, esketamine (Spravato), also saw a major label expansion. In January 2025, the FDA approved Spravato (esketamine) nasal spray as a standalone monotherapy for adults with TRD. Previously, it was only approved as an adjunct to an oral antidepressant. This decision solidifies the role of glutamatergic modulators (NMDA receptor antagonists) as a rapid-acting standard of care and sets a new commercial and clinical benchmark for the incoming psilocybin-based therapies.

Table 1: Summary of Key Late-Stage Clinical Trial Data (2024-2025)

Compound (Sponsor)IndicationTrial / PhaseKey Efficacy EndpointResult (Drug vs. Placebo)Key Regulatory Status (as of Oct 2025)
Midomafetamine (MDMA) (Lykos)PTSDMAPP2 (Phase 3)PTSD Remission (CAPS-5)46.2% vs. 21.4%NDA Rejected (Aug 2024). New Phase 3 trial requested.
Psilocybin (COMP360) (COMPASS)TRDCOMP005 (Phase 3)Change in MADRS @ 6 wks-3.6 point difference (p<0.001)Phase 3 Ongoing (COMP006 enrolling).
Psilocybin (Usona)MDDuAspire (Phase 3)Change in MADRS (NCT06308653)Data Not Yet AvailablePhase 3 Recruiting.
Deuterated Psilocybin (CYB003) (Cybin)MDD (Adjunct)Phase 2Remission (MADRS) @ 12 mos71% (16mg dose)Breakthrough Designation (Mar 2024). Phase 3 planned.
LSD (MM120) (MindMed)GADPhase 2bRemission (HAM-A) @ 12 wks47.5% vs. 20%Breakthrough Designation (Mar 2024).
Esketamine (Spravato) (J&J)TRD(Post-Market)(N/A)(N/A)Expanded Approval for Monotherapy (Jan 2025).

Part II: Mechanisms of Action: A Multi-Scale Neuroscientific Framework

The powerful clinical effects detailed in Part I are driven by a unique neurobiology that is now understood across multiple scales, from initial receptor binding to the restructuring of large-scale brain networks.

2.1 Pharmacological and Receptor-Level Mechanisms

The therapeutic cascade is initiated by distinct molecular actions that separate the major classes of psychedelic-like drugs.

Classic Psychedelics (Psilocybin, LSD): The defining action of all classic psychedelics is their function as agonists at the serotonin 5-HT2A receptor. Psilocybin itself is a prodrug, which is converted to its active metabolite, psilocin, to exert its effects. These 5-HT2A receptors are heavily expressed on layer 5 pyramidal neurons in the prefrontal cortex (PFC). Agonism at these receptors modulates pyramidal cell excitability , initiating a cascade that results in a surge of glutamate signaling.

A pivotal recent insight is the “intracellular receptor” hypothesis. Psychedelics like psilocin are lipophilic, allowing them to pass through the cell membrane. This enables them to activate a second pool of 5-HT2A receptors located inside the neuron. The brain’s endogenous serotonin, which is not lipophilic, cannot access this intracellular pool. This intracellular activation is specifically linked to the induction of neuronal growth and neuroplasticity , explaining why psychedelics produce robust plasticity while SSRIs (which only increase external serotonin) do not.

Entactogens (MDMA): MDMA is not a classic 5-HT2A agonist. Its primary mechanism is as a monoamine releasing agent. It enters the neuron via monoamine transporters (especially the serotonin transporter, SERT) and inhibits the vesicular transporter (VMAT). This action, combined with reversing the direction of the external transporters, causes a massive, acute flood of serotonin, norepinephrine, and dopamine into the synapse. This serotonergic flood, particularly via 5-HT1A receptors, then triggers the indirect release of oxytocin. This oxytocin release is the neurobiological basis for MDMA’s signature “entactogenic” or “empathogenic” effect: heightened trust, reduced fear, and enhanced emotional connection.

Dissociatives (Ketamine/Esketamine): This class works on a completely different primary system: the glutamatergic pathway. Ketamine and its S-enantiomer esketamine are non-competitive antagonists of the N-methyl-D-aspartate (NMDA) receptor. This antagonism is believed to drive rapid synaptogenesis through downstream activation of AMPA receptors, a distinct path to the same plasticity-based outcome.

Table 2: Comparative Neurobiological Mechanisms

Compound ClassExamplesPrimary Molecular TargetKey Downstream Effect(s)Proposed Mechanistic Class
Classic PsychedelicPsilocybin, LSD, DMT5-HT2A Receptor AgonistGlutamate surge ; BDNF increase ; DMN disintegrationPsychedelic; Psychoplastogen
EntactogenMDMA (Midomafetamine)Monoamine Transporter ReversalMassive Serotonin/Norepinephrine release ; Indirect Oxytocin releaseEntactogen; Empathogen
DissociativeKetamine, Esketamine (Spravato)NMDA Receptor AntagonistGlutamate modulation; AMPA receptor activation; Rapid synaptogenesisDissociative; Psychoplastogen

2.2 Cellular and Network-Level Neuroplasticity

The long-term therapeutic benefits of these drugs are not believed to come from the acute drug effects, but from the persistent changes in brain structure and function that these drugs initiate.

The “Psychoplastogen” Effect: Rapid and Persistent Synaptogenesis Psychedelics and ketamine are now classified as “psychoplastogens”: small molecules that rapidly induce structural and functional neural plasticity. This is the cellular-level mechanism for long-term change.

  • Key Evidence: Preclinical in vivo imaging studies in mice have shown that a single dose of psilocybin induces a significant (~10%) increase in the density and size of dendritic spines—the physical sites of synaptic connection—in the frontal cortex.
  • Timing and Persistence: This synaptogenesis occurs rapidly (within 24 hours) and, crucially, is persistent, with these new connections remaining stable for at least one month.
  • Molecular Pathway: This structural growth is driven by the activation of specific molecular pathways, primarily the Brain-Derived Neurotrophic Factor (BDNF) signaling cascade. Psychedelic (and MDMA ) administration increases BDNF levels , which binds to its TrkB receptor, activating downstream pathways like mTOR to initiate the physical construction of new synapses.

The “Entropic Brain” Hypothesis: Acute Network Reconfiguration This is the network-level mechanism correlating with the acute subjective experience. In disorders like depression, key brain networks become rigid and over-connected. The Default Mode Network (DMN)—a network involved in self-referential thought and rumination—is often hyperactive.

  • Key Evidence: Human fMRI studies consistently show that psychedelics acutely “break” this rigidity. They cause a robust decrease in functional connectivity within the DMN (the network “disintegrates”) and a simultaneous increase in functional connectivity between the DMN and other brain networks (the brain becomes more globally integrated). This acute “entropic” state is thought to be the neural correlate of “ego-dissolution” and provides the “reset” that allows maladaptive thought patterns to be broken.

A Unifying Hypothesis: Reopening “Critical Periods” The most recent and powerful unifying theory posits that psychedelics function as “master keys” to reopen transient windows of “youthful” brain plasticity, known as “critical periods”.

  • Mechanism: In adulthood, these periods are “closed,” with neuronal circuits cemented in place by the extracellular matrix (ECM). Research shows that psychedelics tweak the activity of genes related to the ECM, effectively loosening this molecular scaffold.
  • Unifying the Models: This “Critical Period” model elegantly unifies the other two mechanisms. The acute “loosening” of the ECM is the “Entropic Brain” state (network-level disruption). This return to a “youthful” plastic state is what allows for the “Psychoplastogen” effect (rapid, new synaptogenesis). The drug loosens the circuits to open a window of plasticity, and new learning occurs to form new, stable circuits.
  • MDMA and PTSD: This model also perfectly explains MDMA’s specific utility for PTSD. Research found MDMA specifically reopens the social reward learning critical period. This allows patients, within the safety of a therapeutic context, to re-learn social trust and safety, processing traumatic memories without being overwhelmed.

Table 3: Multi-Scale Models of Psychedelic Action

Mechanistic HypothesisNeurological ScaleCore TenetKey Evidence
“Entropic Brain” / DMN DisruptionNetwork-Level (Acute)Psychedelics acutely “disintegrate” rigid brain networks, especially the Default Mode Network (DMN), and increase global connectivity.fMRI shows decreased intra-DMN connectivity and increased inter-network connectivity. Correlates with “ego-dissolution”.
“Psychoplastogen” EffectCellular-Level (Persistent)A single dose induces rapid (24h) and persistent (1+ mo) structural neuroplasticity (synaptogenesis & dendritic spine growth).In vivo microscopy in mice shows ~10% increase in dendritic spine density in PFC. Mediated by BDNF/TrkB/mTOR pathways.
“Reopening Critical Periods”Unifying Model (Developmental)Psychedelics act as “master keys” to reopen windows of “youthful” plasticity by loosening the extracellular matrix (ECM).Psychedelics (MDMA, LSD, Psilocybin) all reopen the social learning critical period in mice. Mediated by ECM gene expression changes.

2.3 Bridging the Mechanistic Gap: The Role of Subjective Experience

The central, unresolved question is how the neurobiological changes (plasticity) relate to the psychological changes (the “trip”). Current evidence strongly suggests the subjective experience is not a side effect, but is, in fact, the central mediator of therapeutic change.

Clinical data robustly correlates the quality of the acute session with long-term reductions in depression.

  • “Mystical Experience”: High scores on the Mystical Experience Questionnaire (MEQ) or the “Oceanic Boundlessness” (OBN) subscale are strong predictors of positive therapeutic outcomes. This correlation remains significant even after controlling for the simple intensity of the drug effect, indicating that the type of experience, not just its strength, is key.
  • “Emotional Breakthrough” and “Insight”: Conversely, high “Dread of Ego Dissolution” (i.e., anxiety) predicts poorer outcomes. The therapeutic experience is one that facilitates “emotional breakthrough” and provides “vivid insights into self-identity” , which serve as “narrative inflection points” for behavioral change.

This evidence reconciles the psychological and biological models. The “Critical Period” and “Psychoplastogen” effects (neurobiology) open a window of heightened plasticity and learning. The profound “Mystical Experience” or “Psychological Insight” (psychology) is the content of the lesson that is learned during that open window. The subsequent synaptogenesis is the brain physically encoding that new, healthier perspective into its structure. This is why the therapeutic framework—”set and setting” and post-session integration therapy —is critical: it guides the learning process while the brain is in this unique, plastic state.

Part III: Synthesis and Forward Outlook

The developments of 2024-2025 demonstrate that while the initial “psychedelic renaissance” hype has met a harsh regulatory reality, the underlying science is stronger than ever. The clinical momentum for psilocybin and LSD is undeniable, and the mechanistic understanding has matured from descriptive phenomenology to a concrete, multi-scale biological model. The future of the field rests on navigating three key challenges exposed by these recent developments.

Analysis: Key Challenges and Future Directions

  1. The “Unblinding” Conundrum: The field’s most urgent challenge is solving the placebo problem. The MDMA CRL has made it clear that the FDA will not approve a drug based on a trial design that is so clearly compromised by functional unblinding. Future trials must incorporate novel designs, such as high-dose vs. low-dose comparisons or the use of “active” placebos (e.g., niacin, midazolam) that mimic some side effects, to maintain a credible blind. The fate of the COMPASS Pathways’ psilocybin application, which used a similar low-dose placebo, will be the critical test case.
  2. The “Scalability” Crisis: The “drug-plus-therapy” model, as implemented in the MDMA trials, is not a viable public health solution at scale. Requiring 8-hour sessions with two dedicated therapists and an estimated cost of $12,000 per patient makes it inaccessible to the majority. This is why the success of MindMed’s “drug-only” MM120 trial for GAD is so disruptive. It suggests a scalable path forward where the drug’s power may be sufficient on its own, radically simplifying the treatment model.
  3. The “Psychoplastogen vs. Psychedelic” Debate: The most profound scientific question is whether the “trip” is truly necessary. The discovery of the intracellular 5-HT2A target and the “psychoplastogen” hypothesis have fueled a search for “non-hallucinogenic” analogs that promote plasticity without a subjective experience. If these compounds succeed, they neatly bypass both the unblinding and scalability problems. If they fail, it will provide definitive proof that the subjective, mystical experience is the indispensable ingredient for therapeutic change.

Concluding Expert Recommendations

The 2024-2025 period marks the end of the field’s optimistic “first wave” and the beginning of a more mature, and more difficult, “second wave.” The MDMA rejection was a necessary (and painful) regulatory correction that forces the field to solve its fundamental methodological flaws. The path forward requires a multi-pronged strategy:

  • For Clinicians and Sponsors: Trial designs must immediately pivot away from naive placebos and toward active-comparator or dose-ranging studies to address the unblinding crisis.
  • For Researchers: Focus must intensify on the “Critical Period” model as the unifying framework, specifically identifying the biomarkers (e.g., ECM-related proteins) that define the “open” and “closed” plastic states.
  • For Health Systems: The commercial success of esketamine monotherapy provides a clear reimbursement and clinical pathway (e.g., REMS programs ) for in-clinic psychoactive substances, creating a blueprint for psilocybin and LSD if they achieve approval.

Ultimately, the future of psychedelic medicine rests on resolving the central tension between mechanism and experience: whether durable healing is a product of pure neurobiology, or whether it requires a guided journey through the mind.

The Unique Processing in Autistic Brains Explained

Posted in Clinical topics, Neuroscience with tags , , , on September 2, 2025 by nvm.m

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The Autistic Architecture

Autism Spectrum Disorder (ASD) is a complex condition with diverse symptoms, affecting how individuals interact with the world and process information. 

Heuristics of Autism

Normally, the brain is constantly making predictions about the world and adjusting those predictions based on new information it receives. This process is called “Bayesian inference.” In simple terms, the brain uses its “prior beliefs” (what it already expects) and new “sensory data” (what it sees, hears, touches, etc.) to figure out what’s happening.

A key concept in understanding autism from this perspective is “divisive normalization.” It is like a surge protector that balances incoming information. In a typical brain, this helps to prevent overstimulation and focuses attention. In autism, this “volume knob” might be turned down or function differently, leading to:

  • Hyper- or Hypo-reactivity to sensory input: Some autistic individuals might be overwhelmed by bright lights or loud sounds (hyper-reactivity), while others might not notice things most people would (hypo-reactivity).
  • Atypical integration of multisensory information: It’s like trying to listen to two different conversations at once – the brain struggles to combine information from different senses (sight, sound, touch) into a coherent picture.
  • Increased sensitivity to sensory noise: Imagine trying to hear someone speak in a very noisy room. For autistic individuals, the brain might have a harder time filtering out the “noise” and focusing on the important sensory “signal.”

Processing Strategies

The structural differences in the autistic brain,  contribute to the widely described characteristics of autism:

  1. Perceptual Processing: As mentioned above, this relates to how sensory information is handled. The “divisive normalization” issue means the brain might interpret sensory input differently, leading to unique ways of perceiving the world. For example, some autistic individuals might excel at tasks requiring fine detail, but struggle with integrating broader information.
  2. Social Communication and Interaction Deficits: This is a core symptom. Typical brain communication is like a symphony orchestra, with different sections playing together in harmony. In autism, some parts of the orchestra might not be playing in sync, or certain instruments might be too loud or too quiet. This “atypical functional connectivity” (how different brain areas communicate) affects social understanding.
    • “Underconnectivity” in large-scale networks: It’s like having weak internet signals between important brain regions that are supposed to work together for social interactions.
    • “Theory of Mind” (ToM) deficits: This is the ability to understand that others have their own thoughts, feelings, and perspectives. If the brain’s “social networks” are not communicating effectively, it can be harder to “read” other people.
  3. Restricted and Repetitive Behaviors (RRBs) and Interests: These behaviors, like repetitive movements or intense focus on specific topics, are also linked to brain differences. It’s like the brain getting “stuck” in certain patterns or having trouble shifting gears. This can involve issues with:
    • Inhibitory control: The brain’s ability to stop or regulate actions.
    • Frontostriatal circuits: Brain pathways involved in habits and routines.
  4. Emotion Regulation and Self-Awareness: Autistic individuals often find it challenging to recognize, express, and understand their own emotions, as well as those of others. This can make navigating social situations difficult.
  5. Cognitive Flexibility and Executive Function: This refers to the brain’s ability to adapt to new situations, switch tasks, and plan. In autism, there can be “cognitive inflexibility,” meaning difficulty with change and a preference for routines. This can be influenced by how the brain grows and develops.

Brain Development and Connectivity

Unusual brain growth trajectories in autism can disrupt how different brain regions connect and communicate. Imagine roads being built in unusual ways, leading to detours or dead ends. This “fall-off” in connectivity can lead to more localized processing rather than seamless communication across larger brain networks.

Tools for Understanding the Autistic Brain

Researchers are using advanced tools like “computational models” and “machine learning” to better understand autism. These are like sophisticated simulations that help scientists:

  • Predictive Models: Help with diagnosis and understanding how autism changes over time.
  • Identify Subgroups: Find distinct groups of autistic individuals based on their brain patterns and symptoms, which could lead to more personalized treatments.
  • Map Brain-Behavior Connections: Figure out which brain differences are linked to specific behaviors.

In essence, autism can be understood as a difference in how the brain computes and processes information, often due to imbalances in its internal “volume controls” and communication networks. This understanding, informed by genetics and brain development, opens doors for more precise diagnoses and tailored interventions for each individual on the autism spectrum.

Misuse of P values

Posted in Science/Tech with tags on March 11, 2016 by nvm.m

 Statisticians issue warning over misuse of P values

Offhanded use of statistics, especially by people without a solid scientific training, can lead to misleading conclusions.

Having spent long hours “on call” at the ER requires a lot of commitment and physical stamina. I know that because I spent more such hours during training than the average medical doctor (not by choice, but because I was forced to repeat several rotations I had done in previous years). Nonetheless, clinical training alone does not provide scientific insight, let alone the ability to design a scientific project and interpret the findings. Doing science requires a different set of skills, not available in the regular medical training (and no, reading journal articles does not provide such skills more than attending concerts prepares you to become a symphony orchestra performer).

Not acknowledging the aforementioned fact has led to a climate of doubt about the validity of a significant number of research reports, due to the reasons explained on this Nature article, among many others.

Light therapy for dummies

Posted in Neuroscience with tags on November 14, 2013 by nvm.m

Sleep wake cycle human oscilator

Since de Mairan’s famous initial description of circadian rhythms, through Pittendrigh’s subtle insights and contributions to the field in the 50′, until the development of working models to understand the human circadian, ultradian and infradian rhythms, the development of Chronobiology in the 20th century has been nothing less than astounding, not only because of its importance to physiology alone, but because it is an apt platform for further abstractions trying to understand how the waxing and waning of natural processes include als0  the cycles of life (it has an inherent heuristic value). Just as an example, the genetics of circadian rhythms seem to command cycling rhythms in diferent time scales; in other words, the biological clocks seem to possess self similarity, with a demonstrable common molecular substrate at different time scales. That should be enough to draw the attention of any scientist worth her salt (from any discipline).

In the late 80s, I was lucky enough to learn Chronobiology from Ennio Vivaldi, an expert with a solid scientific foundation (including the ultimate scientific skill: humor). I was very impressed by the work of chronobiologists back then, and I still am. My expectations for that science were high for the following years. I expected greater contributions and especially the advent of new pathophysiological concepts (a clear definition of chronopathies ) linked to some innovative therapeutic interventions (electro-chemical pacemakers?).

Twenty years later, in Baltimore, I got acquainted with a disciple of two Chronobiology pioneers, Wehr and Rosenthal. He seemed to enjoy lecturing about the basics of Chronobiology clinical audiences previously unexposed to the topic. For me, it was utmost interesting to see pretty much the same statements and even the same slides that I saw Vivaldi presenting 20 years before. During one of the lectures, my request, “Can I have  your slide from Moore-Ede’s article for my own presentation next week?” must have puzzled him. On the other hand, what puzzled me  was that, after 20 years there seemed to be no significant developments beyond what had already been established decades before. Why?

One factor may have been the almost complete isolation between the practicing scientists in that field and the clinicians which could have potentially benefited from that science. While training at the Institute of Neurosurgery in Chile, I remember being approached by a neurology resident who wanted to know how to use light therapy with patients (at the time, a relatively novel approach). The week before, she had interrupted my presentation about the use of Chronobiology in clinics.  Visibly annoyed, she had stood up in the middle of my talk to berate me for “bringing up mathematical models” into the discussion (a damning faux pas, I would come to realize).

At this point I’m quite aware that clinicians are not usually willing to bridge the gap between science and care delivery, and I’m fine with that.

For a patient who wants to use a recently purchased light box for treatment of depression, the initial instructions are very simple:

  • Understand that there is a sensitive period, about 2 hours after waking up (regardless when the awakening takes place) during which exposure to the light works. Using the lamp after that period is useless and may even be harmful if used in the evening (when any bright light should be avoided).
  • Do not stare into the lamp. The retinohypothalamic tract starts from the large peripheral ganglion cells, which respond almost exclusively to the local  amount of lighting. All is needed is the peripheral vision to detect the intensity of the ambient light.
  • A reasonable starting time of exposure would be 15-30 minutes.
  • Work in collaboration with your doctor all the time. There are many factors that may need to be adjusted in order for this or any other therapy to actually work.

Neuroeconomics

Posted in Neuroscience, social behavior with tags , , on January 12, 2013 by nvm.m

While common opinion would say that any individual with a cognitive deficit (including the affective component) would be at a disadvantage at most complex (socially relevant) tasks, this is not necessarily true.
My personal experience is full of examples (like the fact that concrete thought enables you well for medical school). However, it is always nice to bump into some published evidence, like the advantage of brain-damaged investors.
On a wider perspective, predicting a system’s behavior approaching it as a black box can only guarantee an adequate predictive model if the number of observations is considered infinite. Otherwise, for practical purposes, some cases justify looking into its inner structure and workings, as it appears to be in the case of  neuroeconomics.

Linearization lowers anxiety

Posted in Neuroscience, social behavior with tags , , on May 25, 2011 by nvm.m

One of the interesting features of the approach called getting things done is establishing a priority that makes it easier to follow a sequential list of tasks. By relieving the individual from the need for reformulating priorities on every step of her daily activities, it allows for faster results with a lower level of stress.
Sorting out a set in a multidimensional space through unidimensional relationships is an intensive process, especially when that is required within very narrow time constraints (as it usually happens in ‘real life’). This type of processing is highly associated with what some people call (vaguely) “executive functions“. The ability to reformulate our (perceptive) world in such a way can be significantly compromised in persons who suffer conditions that affect their “executive abilities“. The anxiety and frustration derived from this type of demand obviously adds up to these people’s suffering, and impair them even further. This positive feedback probably contributes to the time distortion they tend to experience.
Within an anthropological framework, it is interesting that, once some vulnerable individuals fall into this “cognitive vortex”, modern societies do very little to pull them out of it. We have endless sources of entertainment (to alienate us from the real problems), but very few tools to rebuild our work methods and restructure our life. Once facing the major existential dilemma of engineering our life, the most straightforward solution is to forfeit our “executive functions” altogether, and let others structure our life “for our own good”. As contemporary society becomes more demanding and dehumanized, we are witnessing the emergence of cults, societies, gangs or clubs of all flavors (most of them totalitarian in nature). They all offer a cheap way to structure our life from outside, according to some narrow-minded vision of the world, hence lowering people’s baseline anxiety. The result is a proclivity for establishing vertical hierarchies within society and for increasing struggles (often violent) between various fanatic ideologies. Until we acquire (individually) critical thinking, we can anticipate the flourishing of revamped breeds of fascism and a delightful cornucopia of “jihads” (of all flavors).

Multiplexing probably requires dreaming

Posted in Neuroscience with tags , , on January 29, 2011 by nvm.m

Multiplexing (utilization of the same microcircuitry for different computational tasks) has been proposed as one of the properties of the nervous system.

It does make sense from an evolutionary standpoint, since it increases the efficiency and speed of the system (which can certainly use some help whenever it attempts to solve real world problems using deterministic approaches, and inevitably chokes with immense numbers).

Considering this, along with the fact that the production of language acts like the vehicle for sequentially increasing levels of abstraction, the existence of homomorphism is a highly likely (although not necessary) consequence. In a clinical setting, likely beyond a reasonable limit (let’s say 0.9999) is good enough for me.

So, mapping different layers of homomorphism (as some sort of metacognition) is probably another important cognitive activity in itself. That is the realm of ‘free association’, dreams and all sorts of art. Maybe that is what the frontal lobe does frantically during those precious REM sleep minutes. Maybe survival depends on it. Establishing a strong connection between the physical world and this metacognitive world should be the most important goal for humankind as a species. Considering that living systems are operationally closed (and have no way to distinguish between the inside and the outside), studying organization in general is equivalent to studying ourselves. Let’s do that.

Honorific affixes

Posted in Neuroscience with tags , on April 30, 2010 by nvm.m

Peoples names usually indicate, directly or indirectly, the person’s hierarchy in the pack.
In some languages the personal hierarchic statement consists of a prefix accompanying the name (Count Tepes, Dr. Mengele). In other languages, such as Japanese, it is usually a suffix (Homer Simpson San).
I wonder if the fact that the affix denoting the person’s rank goes before or after the name has some association with the way a particular culture handles social hierarchies. The order in which the brain perceives and decodes the verbal or written expression may impose certain time limits to the behavioral response, especially when particular words, such as those indicating your level on the food chain, contain a high emotional load.

Why getting up early is so important

Posted in Neuroscience with tags , on February 10, 2009 by nvm.m

Our sleep-wake cycles are governed by internal clocks in our brains, obviously connected to other clocks in the rest of our bodies. It’s like an internal orchestra.
The period (time needed to complete a full revolution) of our sleep-wake cycle clock is close to 24 hours but not quite that. It’s actually slightly longer. That is why we need a daily “entrainment” from natural light to reset our clocks to the external (geophysical) time.
It is well known that as people grow older, they tend to wake up earlier. One explanation is that their internal clock controlling their sleep-wake cycles changes with age; its period becomes shorter, which means the frequency of the oscillations increases; that is enough to change the phase relation between the internal clock and the external (“real”) time. It’s a fact documented in golden hamsters (a preferred mamal chronobiology model for decades) and presumably other species too.
In humans, early awakening is a problem for many reasons. Remember the elderly gentleman who wakes up before dawn to count the silverware in his home to make sure nobody has stolen one his his spoons? Yes, early awakening may be a sign of more than one illness.
In human societies, traditionally the ones in power have been individuals of advanced age; this is not so often these days; additionally, alpha males are known to be more aggressive than the average in primates; aggressive behavior in mammals is associated with more regular sleep-wake cycles.

Among primates, and humans are no exception, to hold their power, the dominant individuals need to systematically oppress their orderlings. Since early awakening is a common feature in old age, a good use of this feature by the dominant males is to force others to wake up early too. That way what is basically a health problem becomes a virtue and also a mechanism of domination. They can force all their subordinates to be at work before dawn. That helps them look responsible, hard working and productive. It’s also a way to infuse a sense of defeat on the ones in the lower ranks.
So, here is the answer why so many institutions have a mandatory early schedule. Our leaders set an example of virtue and work ethics by showing up at work earlier than everyone and obviously forcing everybody else to do the same. Only recently some voices have been raised to question the early schedules in schools, for example. However, popular culture (which is usually shaped by the dominant groups) still maintains the traditional association between early rising and hard work, virtue and honesty.

Why Open Source

Posted in Science/Tech with tags , on April 30, 2008 by nvm.m

Linux

Years ago, when I got acquainted with Linux, I was annoyed. I wondered why anybody would be willing to learn how to type all those cryptic commands and perform mysterious operations just to work on a computer. Gradually, I learned to appreciate its unexpected virtues. These days, it’s the environment where I feel most comfortable. Some will say, however, that BSD (another flavor of free Unix) is even better.

What are the advantages of an open source operating system? I would list them in two main categories.

Personal benefits

linux lock

For the Linux user, those days shopping for anti virus, firewalls and similar security software are over. Trojans, bots and similar are things of the past. In a complex and hectic world, that is one less problem to worry about. You will not have to suffer all those false alarms from your “security suite” interrupting your work.

Speed notoriously increases, especially in intensive tasks, like image processing or number crunching. The computer boots faster and many programs, including Microsoft Office, typically run better.

Stability becomes the rule. In a well configured system, computer crashes are a sporadic phenomenon.

For scientists, there are plenty of excellent programs available for download. Most of the tasks that would require thousands of dollars in proprietary software to implement, can be currently performed with efficient and reliable open software.

Environmental benefits

Using Open Source products supports a number of small companies all over the world, even in very poor communities. It promotes development of resources that will be used by a greater number of people and that will help reduce poverty. Many of our brothers and sisters in the world who are less fortunate will have access to current technology thanks to massive participation in the Open Source movement.

Open Source directly helps green computing. This will reduce global warming and pollution in general.

Finally, as a form of social therapy, the Open Source movement promotes unselfish collaboration without political or ideological boundaries. In a world troubled by greed and hatred, this effect in itself constitutes a priceless tool.